Hi. I made the following operations:
$ cd ~
$ git clone https://github.com/samtools/htsjdk.git
Then changed in file “/gradle/wrapper/gradle-wrapper.properties” download path from 3.1 to 4.6 (the latest, before it I got 'Could not determine java version from ‘9.0.4’ error).
Then tried to create a jar file:
$ ./gradlew jar
I got error. The following output is for
$ ./gradlew jar --stacktrace
FAILURE: Build failed with an exception.
* Where:
Build file '/home/user/picard/htsjdk_new/htsjdk/build.gradle' line: 15
* What went wrong:
An exception occurred applying plugin request [id: 'com.github.maiflai.scalatest', version: '0.15']
> Failed to apply plugin [id 'com.github.maiflai.scalatest']
> java.lang.UnsupportedOperationException (no error message)
* Try:
Run with --info or --debug option to get more log output. Run with --scan to get full insights.
* Exception is:
org.gradle.api.plugins.InvalidPluginException: An exception occurred applying plugin request [id: 'com.github.maiflai.scalatest', version: '0.15']
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.exceptionOccurred(DefaultPluginRequestApplicator.java:247)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.applyPlugin(DefaultPluginRequestApplicator.java:229)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.applyPlugins(DefaultPluginRequestApplicator.java:148)
at org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl.apply(DefaultScriptPluginFactory.java:184)
at org.gradle.configuration.BuildOperationScriptPlugin$1.run(BuildOperationScriptPlugin.java:61)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
at org.gradle.configuration.BuildOperationScriptPlugin.apply(BuildOperationScriptPlugin.java:58)
at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:41)
at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:26)
at org.gradle.configuration.project.ConfigureActionsProjectEvaluator.evaluate(ConfigureActionsProjectEvaluator.java:34)
at org.gradle.configuration.project.LifecycleProjectEvaluator.doConfigure(LifecycleProjectEvaluator.java:64)
at org.gradle.configuration.project.LifecycleProjectEvaluator.access$100(LifecycleProjectEvaluator.java:34)
at org.gradle.configuration.project.LifecycleProjectEvaluator$ConfigureProject.run(LifecycleProjectEvaluator.java:110)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
at org.gradle.configuration.project.LifecycleProjectEvaluator.evaluate(LifecycleProjectEvaluator.java:50)
at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:667)
at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:136)
at org.gradle.execution.TaskPathProjectEvaluator.configure(TaskPathProjectEvaluator.java:35)
at org.gradle.execution.TaskPathProjectEvaluator.configureHierarchy(TaskPathProjectEvaluator.java:60)
at org.gradle.configuration.DefaultBuildConfigurer.configure(DefaultBuildConfigurer.java:38)
at org.gradle.initialization.DefaultGradleLauncher$ConfigureBuild.run(DefaultGradleLauncher.java:261)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
at org.gradle.initialization.DefaultGradleLauncher.configureBuild(DefaultGradleLauncher.java:173)
at org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:132)
at org.gradle.initialization.DefaultGradleLauncher.executeTasks(DefaultGradleLauncher.java:115)
at org.gradle.internal.invocation.GradleBuildController$1.call(GradleBuildController.java:78)
at org.gradle.internal.invocation.GradleBuildController$1.call(GradleBuildController.java:75)
at org.gradle.internal.work.DefaultWorkerLeaseService.withLocks(DefaultWorkerLeaseService.java:152)
at org.gradle.internal.invocation.GradleBuildController.doBuild(GradleBuildController.java:100)
at org.gradle.internal.invocation.GradleBuildController.run(GradleBuildController.java:75)
at org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:28)
at org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35)
at org.gradle.tooling.internal.provider.ValidatingBuildActionRunner.run(ValidatingBuildActionRunner.java:32)
at org.gradle.launcher.exec.RunAsBuildOperationBuildActionRunner$1.run(RunAsBuildOperationBuildActionRunner.java:43)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
at org.gradle.launcher.exec.RunAsBuildOperationBuildActionRunner.run(RunAsBuildOperationBuildActionRunner.java:40)
at org.gradle.tooling.internal.provider.SubscribableBuildActionRunner.run(SubscribableBuildActionRunner.java:51)
at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:49)
at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:32)
at org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:39)
at org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:25)
at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:80)
at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:53)
at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:57)
at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:32)
at org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:36)
at org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:25)
at org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:43)
at org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:29)
at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:64)
at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:29)
at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:59)
at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:44)
at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:45)
at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:30)
at org.gradle.launcher.daemon.server.exec.ExecuteBuild.doBuild(ExecuteBuild.java:67)
at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.WatchForDisconnection.execute(WatchForDisconnection.java:37)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.ResetDeprecationLogger.execute(ResetDeprecationLogger.java:26)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.RequestStopIfSingleUsedDaemon.execute(RequestStopIfSingleUsedDaemon.java:34)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:74)
at org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:72)
at org.gradle.util.Swapper.swap(Swapper.java:38)
at org.gradle.launcher.daemon.server.exec.ForwardClientInput.execute(ForwardClientInput.java:72)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.LogAndCheckHealth.execute(LogAndCheckHealth.java:55)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.LogToClient.doBuild(LogToClient.java:62)
at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment.doBuild(EstablishBuildEnvironment.java:82)
at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
at org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy$1.run(StartBuildOrRespondWithBusy.java:50)
at org.gradle.launcher.daemon.server.DaemonStateCoordinator$1.run(DaemonStateCoordinator.java:295)
at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
Caused by: org.gradle.api.internal.plugins.PluginApplicationException: Failed to apply plugin [id 'com.github.maiflai.scalatest']
at org.gradle.api.internal.plugins.DefaultPluginManager.doApply(DefaultPluginManager.java:150)
at org.gradle.api.internal.plugins.DefaultPluginManager.apply(DefaultPluginManager.java:125)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator$3.run(DefaultPluginRequestApplicator.java:151)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.applyPlugin(DefaultPluginRequestApplicator.java:225)
... 92 more
Caused by: java.lang.UnsupportedOperationException
at org.gradle.api.internal.plugins.DefaultPluginContainer.add(DefaultPluginContainer.java:55)
at org.gradle.api.plugins.PluginCollection$add.call(Unknown Source)
at com.github.maiflai.ScalaTestPlugin.apply(ScalaTestPlugin.groovy:20)
at com.github.maiflai.ScalaTestPlugin.apply(ScalaTestPlugin.groovy)
at org.gradle.api.internal.plugins.ImperativeOnlyPluginTarget.applyImperative(ImperativeOnlyPluginTarget.java:42)
at org.gradle.api.internal.plugins.RuleBasedPluginTarget.applyImperative(RuleBasedPluginTarget.java:50)
at org.gradle.api.internal.plugins.DefaultPluginManager.addPlugin(DefaultPluginManager.java:164)
at org.gradle.api.internal.plugins.DefaultPluginManager.access$200(DefaultPluginManager.java:47)
at org.gradle.api.internal.plugins.DefaultPluginManager$AddPluginBuildOperation.run(DefaultPluginManager.java:252)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
at org.gradle.api.internal.plugins.DefaultPluginManager.doApply(DefaultPluginManager.java:144)
... 95 more
* Get more help at https://help.gradle.org
What should I do with this problem?