Generate runnable jar pakage dependencies

[juniorjrjl (José Luiz Abreu Cardoso Junior)]

Hello I’m new in gradle.
how can I generate a runnable jar package dependencies and not extract it in runnable jar.
My configuration in project in this moment is this

build.gradle:

apply plugin: 'java'
apply plugin: 'application'
apply plugin: 'eclipse'
archivesBaseName = 'ServerSocket'
version = '3.2.1'

mainClassName = 'br.com.serversocket.main.Main'

compileTestJava {
 	sourceCompatibility = 1.8
	targetCompatibility = 1.8
}

compileJava {
	sourceCompatibility = 1.7
	targetCompatibility = 1.7
}

jar {
    dependsOn 'test'
    archiveName = "ServerSocket.jar"
	from {
		configurations.runtime.collect {
			it.isDirectory() ? it : zipTree(it)
		}

        configurations.compile.collect {
            it.isDirectory() ? it : zipTree(it)
        }
    }

    manifest {
        attributes 'Main-Class': 'br.com.serversocket.main.Main'
    }

    exclude 'META-INF/*.RSA', 'META-INF/*.SF','META-INF/*.DSA'
}

test{
	useJUnitPlatform()
	dependsOn 'cleanTest'

    testLogging {
        events "passed", "skipped", "failed"
    }
    afterTest { desc, result -> 
        logger.quiet "Executing test ${desc.name} [${desc.className}] with result: ${result.resultType}"
    }
    testLogging {
        exceptionFormat = 'full'
    }	
}

eclipse.classpath.file.whenMerged {
  entries.each { println it.path }
}
configurations { 
	providedCompile 
}

repositories {
    mavenCentral()
    mavenLocal()
}

ext {
	jacksonVersion = '2.9.1'
	hibernateVerison = '5.1.0.Final'
	slf4jVerison = '1.7.25'
	log4jVerison = '2.11.1'
	junitVersion = '5.2.0'
	emailVersion = '1.6.1'
	mongoDBVersion = '3.8.0'
}

dependencies {
	
	//compile files(fileTree(dir: 'lib', includes: ['*.jar']))	
	compile "org.hibernate:hibernate-jpamodelgen:${hibernateVerison}"
	compile "org.hibernate:hibernate-c3p0:${hibernateVerison}"
	compile "org.hibernate:hibernate-core:${hibernateVerison}"
	compile "org.hibernate:hibernate-entitymanager:${hibernateVerison}"
	
	compile "org.slf4j:slf4j-simple:${slf4jVerison}"
	compile "org.slf4j:slf4j-api:${slf4jVerison}"
	
	compile "org.apache.logging.log4j:log4j-api:${log4jVerison}"
	compile "org.apache.logging.log4j:log4j-core:${log4jVerison}"
	compile "org.apache.logging.log4j:log4j-mongodb3:${log4jVerison}"
	
	
	compile "com.fasterxml.jackson.core:jackson-core:${jacksonVersion}"
	compile "com.fasterxml.jackson.core:jackson-databind:${jacksonVersion}"
	compile "com.fasterxml.jackson.core:jackson-annotations:${jacksonVersion}"
	compile "com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:${jacksonVersion}"
	
	compile "javax.mail:javax.mail-api:${emailVersion}"
	compile "com.sun.mail:javax.mail:${emailVersion}"
	
	compile "org.mongodb:mongodb-driver:${mongoDBVersion}"
	compile "org.mongodb:mongodb-driver-core:${mongoDBVersion}"
	compile "org.mongodb:bson:${mongoDBVersion}"
	
	
	compile group: 'org.projectlombok', name: 'lombok', version: '1.18.2'
	compile group: 'org.yaml', name: 'snakeyaml', version: '1.21'

	compile group: 'mysql', name: 'mysql-connector-java', version: '5.1.44'
	compile group: 'org.hibernate.common', name: 'hibernate-commons-annotations', version: '5.0.1.Final'
	compile group: 'org.hibernate.javax.persistence', name: 'hibernate-jpa-2.1-api', version: '1.0.2.Final'
	compile group: 'com.mchange', name: 'c3p0', version: '0.9.2.1'
	compile group: 'org.eclipse.persistence', name: 'javax.persistence', version: '2.1.0'
	compile group: 'org.jboss.logging', name: 'jboss-logging', version: '3.3.1.Final'
	compile group: 'commons-logging', name: 'commons-logging', version: '1.0.3'
	compile group: 'org.apache.mina', name: 'mina-core', version: '2.0.19'
	compile group: 'antlr', name: 'antlr', version: '2.7.7'
	compile group: 'com.fasterxml', name: 'classmate', version: '1.3.0'
	compile group: 'commons-codec', name: 'commons-codec', version: '1.11'
	compile group: 'commons-beanutils', name: 'commons-beanutils', version: '1.6'
	compile group: 'commons-collections', name: 'commons-collections', version: '3.2.1'
	compile group: 'org.apache.commons', name: 'commons-email', version: '1.5'
	compile group: 'commons-httpclient', name: 'commons-httpclient', version: '3.1'
	compile group: 'commons-lang', name: 'commons-lang', version: '2.3'
	compile group: 'commons-discovery', name: 'commons-discovery', version: '0.2'
	compile group: 'dom4j', name: 'dom4j', version: '1.6.1'
	compile group: 'net.sf.ehcache', name: 'ehcache', version: '1.5.0'
	compile group: 'org.apache.geronimo.specs', name: 'geronimo-jta_1.1_spec', version: '1.1.1'
	compile group: 'org.jboss', name: 'jandex', version: '2.0.3.Final'
	compile group: 'org.javassist', name: 'javassist', version: '3.22.0-GA'
	compile group: 'jdom', name: 'jdom', version: '1.1'
	compile group: 'javax.transaction', name: 'jta', version: '1.1'
	compile group: 'com.vividsolutions', name: 'jts', version: '1.13'
	compile group: 'org.apache.axis', name: 'axis', version: '1.4'
	compile group: 'axis', name: 'axis-jaxrpc', version: '1.4'
	compile group: 'javax.xml.soap', name: 'saaj-api', version: '1.3'
	compile group: 'wsdl4j', name: 'wsdl4j', version: '1.6.2'
	compile group: 'com.mchange', name: 'mchange-commons-java', version: '0.2.3.4'


	testCompile group: 'com.h2database', name: 'h2', version: '1.4.197'
	testCompile "org.junit.jupiter:junit-jupiter-api:${junitVersion}"
	testCompile "org.junit.jupiter:junit-jupiter-engine:${junitVersion}"
	testCompile "org.junit.jupiter:junit-jupiter-params:${junitVersion}"
	testCompile group: 'org.junit.platform', name: 'junit-platform-launcher', version: '1.2.0'
}

configurations {
    all*.exclude group: 'javassist', module: 'javassist'
}

[DJViking (Sverre Moe)]

The application plugin you have applied creates an archive that packages the JARs from the application and its dependencies.

build/distribution/application-1.0.0.zip
build/distribution/application-1.0.0.tar

[juniorjrjl (José Luiz Abreu Cardoso Junior)]

Yes but the dependencies is extracted inside runnable jar, I need to package dependencies like jars and not extract a jars inside runnable jar

[DJViking (Sverre Moe)]

Not sure what you mean.
You want all the dependencies packed within a single JAR file?

[juniorjrjl (José Luiz Abreu Cardoso Junior)]

Yes, actualy inside my runnable jar is this:

all depedencies are extracted, this work for me for now, but recently I configure my log4j to generate log in a MongoDb and this package kind generated a bug and I need include jars without extracted in runnable jar to solve this problem.

[juniorjrjl (José Luiz Abreu Cardoso Junior)]

complementing
I need to do this with some jars, because I tested with all and get errors because some dependencies need to be extracted

like this with some jars:

[ZRich97 (Zachary Richardson)]

You might be able to look into the shadow plugin, which creates runnable fat jars.

Some useful documentation can be found here.

[juniorjrjl (José Luiz Abreu Cardoso Junior)]

Thank you!
I finally solved my problem

Only completing a solution:
Shadow have a bug to work with log4j and need a additional plugin to fix it, follow de link:

TheBoegl/shadow-log4j-transformer

follow my build.gradle:

buildscript {
    repositories {
        jcenter()
    }
    dependencies {
        classpath 'com.github.jengelman.gradle.plugins:shadow:2.0.4'
        classpath 'de.sebastianboegl.gradle.plugins:shadow-log4j-transformer:2.2.0'
    }
}

apply plugin: 'java'
apply plugin: 'application'
apply plugin: 'eclipse'
apply plugin: 'com.github.johnrengelman.shadow'
archivesBaseName = 'ServerSocket'
version = '3.2.1'

mainClassName = 'br.com.serversocket.main.Main'

compileTestJava {
 	sourceCompatibility = 1.8
	targetCompatibility = 1.8
}

compileJava {
	sourceCompatibility = 1.7
	targetCompatibility = 1.7
}

shadowJar {
    //dependsOn 'test'
    transform(de.sebastianboegl.gradle.plugins.shadow.transformers.Log4j2PluginsFileTransformer)
    archiveName = "ServerSocket.jar"
    
    manifest {
        attributes 'Main-Class': 'br.com.serversocket.main.Main'
    }

    exclude 'META-INF/*.RSA', 'META-INF/*.SF','META-INF/*.DSA'
}

jar {
    //dependsOn 'test'
    archiveName = "ServerSocket.jar"
	from {
		configurations.runtime.collect {
			it.isDirectory() ? it : zipTree(it)
		}

        configurations.compile.collect {
            it.isDirectory() ? it : zipTree(it)
        }
    }

    manifest {
        attributes 'Main-Class': 'br.com.serversocket.main.Main'
    }

    exclude 'META-INF/*.RSA', 'META-INF/*.SF','META-INF/*.DSA'
}

test{
	useJUnitPlatform()
	dependsOn 'cleanTest'

    testLogging {
        events "passed", "skipped", "failed"
    }
    afterTest { desc, result -> 
        logger.quiet "Executing test ${desc.name} [${desc.className}] with result: ${result.resultType}"
    }
    testLogging {
        exceptionFormat = 'full'
    }	
}

eclipse.classpath.file.whenMerged {
  entries.each { println it.path }
}
configurations { 
	providedCompile 
}

repositories {
    mavenCentral()
    mavenLocal()
}

ext {
	jacksonVersion = '2.9.1'
	hibernateVerison = '5.1.0.Final'
	slf4jVerison = '1.7.25'
	log4jVerison = '2.11.1'
	junitVersion = '5.2.0'
	emailVersion = '1.6.1'
	mongoDBVersion = '3.8.0'
}

dependencies {
	
	//compile files(fileTree(dir: 'lib', includes: ['*.jar']))	
	compile "org.hibernate:hibernate-jpamodelgen:${hibernateVerison}"
	compile "org.hibernate:hibernate-c3p0:${hibernateVerison}"
	compile "org.hibernate:hibernate-core:${hibernateVerison}"
	compile "org.hibernate:hibernate-entitymanager:${hibernateVerison}"
	
	compile "org.slf4j:slf4j-simple:${slf4jVerison}"
	compile "org.slf4j:slf4j-api:${slf4jVerison}"
	
	compile "org.apache.logging.log4j:log4j-api:${log4jVerison}"
	compile "org.apache.logging.log4j:log4j-core:${log4jVerison}"
	compile "org.apache.logging.log4j:log4j-mongodb3:${log4jVerison}"
	
	
	compile "com.fasterxml.jackson.core:jackson-core:${jacksonVersion}"
	compile "com.fasterxml.jackson.core:jackson-databind:${jacksonVersion}"
	compile "com.fasterxml.jackson.core:jackson-annotations:${jacksonVersion}"
	compile "com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:${jacksonVersion}"
	
	compile "javax.mail:javax.mail-api:${emailVersion}"
	compile "com.sun.mail:javax.mail:${emailVersion}"
	
	compile "org.mongodb:mongodb-driver:${mongoDBVersion}"
	compile "org.mongodb:mongodb-driver-core:${mongoDBVersion}"
	compile "org.mongodb:bson:${mongoDBVersion}"
	
	
	compile group: 'org.projectlombok', name: 'lombok', version: '1.18.2'
	compile group: 'org.yaml', name: 'snakeyaml', version: '1.21'

	compile group: 'mysql', name: 'mysql-connector-java', version: '5.1.44'
	compile group: 'org.hibernate.common', name: 'hibernate-commons-annotations', version: '5.0.1.Final'
	compile group: 'org.hibernate.javax.persistence', name: 'hibernate-jpa-2.1-api', version: '1.0.2.Final'
	compile group: 'com.mchange', name: 'c3p0', version: '0.9.2.1'
	compile group: 'org.eclipse.persistence', name: 'javax.persistence', version: '2.1.0'
	compile group: 'org.jboss.logging', name: 'jboss-logging', version: '3.3.1.Final'
	compile group: 'commons-logging', name: 'commons-logging', version: '1.0.3'
	compile group: 'org.apache.mina', name: 'mina-core', version: '2.0.19'
	compile group: 'antlr', name: 'antlr', version: '2.7.7'
	compile group: 'com.fasterxml', name: 'classmate', version: '1.3.0'
	compile group: 'commons-codec', name: 'commons-codec', version: '1.11'
	compile group: 'commons-beanutils', name: 'commons-beanutils', version: '1.6'
	compile group: 'commons-collections', name: 'commons-collections', version: '3.2.1'
	compile group: 'org.apache.commons', name: 'commons-email', version: '1.5'
	compile group: 'commons-httpclient', name: 'commons-httpclient', version: '3.1'
	compile group: 'commons-lang', name: 'commons-lang', version: '2.3'
	compile group: 'commons-discovery', name: 'commons-discovery', version: '0.2'
	compile group: 'dom4j', name: 'dom4j', version: '1.6.1'
	compile group: 'net.sf.ehcache', name: 'ehcache', version: '1.5.0'
	compile group: 'org.apache.geronimo.specs', name: 'geronimo-jta_1.1_spec', version: '1.1.1'
	compile group: 'org.jboss', name: 'jandex', version: '2.0.3.Final'
	compile group: 'org.javassist', name: 'javassist', version: '3.22.0-GA'
	compile group: 'jdom', name: 'jdom', version: '1.1'
	compile group: 'javax.transaction', name: 'jta', version: '1.1'
	compile group: 'com.vividsolutions', name: 'jts', version: '1.13'
	compile group: 'org.apache.axis', name: 'axis', version: '1.4'
	compile group: 'axis', name: 'axis-jaxrpc', version: '1.4'
	compile group: 'javax.xml.soap', name: 'saaj-api', version: '1.3'
	compile group: 'wsdl4j', name: 'wsdl4j', version: '1.6.2'
	compile group: 'com.mchange', name: 'mchange-commons-java', version: '0.2.3.4'


	testCompile group: 'com.h2database', name: 'h2', version: '1.4.197'
	testCompile "org.junit.jupiter:junit-jupiter-api:${junitVersion}"
	testCompile "org.junit.jupiter:junit-jupiter-engine:${junitVersion}"
	testCompile "org.junit.jupiter:junit-jupiter-params:${junitVersion}"
	testCompile group: 'org.junit.platform', name: 'junit-platform-launcher', version: '1.2.0'
}

configurations {
    all*.exclude group: 'javassist', module: 'javassist'
}