I’m brand new to gradle and having issues building Picard.
(https://github.com/broadinstitute/picard/blob/2.22.8/README.md)
I made sure to use java/1.8.0_45 as my default Java
I follow their instructions directly, but I get a few warnings during the jar building step:
./gradlew shadowJar
Task :compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
BUILD SUCCESSFUL in 10s
4 actionable tasks: 4 executed
I found someone with the same issue, but I don’t know how to implement the fix suggested (Recompile with -Xlint parameters)
when I test the build, it gets to about 90% successful tests, but then fails with this message:
Results: SUCCESS (105 tests, 104 successes, 0 failures, 1 skipped)
Task :barclayTest FAILED
FAILURE: Build failed with an exception.
- What went wrong:
Execution failed for task ‘:barclayTest’.
Process ‘Gradle Test Executor 2’ finished with non-zero exit value 152
This problem might be caused by incorrect test process configuration.
Please refer to the test execution section in the User Manual at Testing in Java & JVM projects
- Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. - Get more help at https://help.gradle.org
BUILD FAILED in 1m 28s
5 actionable tasks: 3 executed, 2 up-to-date
Any insight into how I can fix this issue would be greatly appreciated. Thank you